Molecular Mechanisms of Long Noncoding RNAs

Wang K C,Chang H Y

Emerging functional and mechanistic paradigms of mammalian long non-coding RNAs

Moran VA,Perera RJ,Khalil AM

Clusters of Internally Primed Transcripts Reveal Novel Long Noncoding RNAs

Furuno M,Pang KC,Ninomiya N,Fukuda S,Frith MC,Bult C,Kai C,Kawai J,Carninci P,Hayashizaki Y,Mattick JS,Suzuki H

Modular regulatory principles of large non-coding RNAs

Guttman M,Rinn JL

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

Trapnell C,Williams BA,Pertea G,Mortazavi A,Kwan G,van Baren MJ,Salzberg SL,Wold BJ,Pachter L

Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

Guttman M,Garber M,Levin JZ,Donaghey J,Robinson J,Adiconis X,Fan L,Koziol MJ,Gnirke A,Nusbaum C,Rinn JL,Lander ES,Regev A

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

Cabili MN,Trapnell C,Goff L,Koziol M,Tazon-Vega B,Regev A,Rinn JL

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

Khalil AM,Guttman M,Huarte M,Garber M,Raj A,Rivea Morales D,Thomas K,Presser A,Bernstein BE,van Oudenaarden A,Regev A,Lander ES,Rinn JL

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

Guttman M,Amit I,Garber M,French C,Lin MF,Feldser D,Huarte M,Zuk O,Carey BW,Cassady JP,Cabili MN,Jaenisch R,Mikkelsen TS,Jacks T,Hacohen N,Bernstein BE,Kellis M,Regev A,Rinn JL,Lander ES

Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis

Gupta RA,Shah N,Wang KC,Kim J,Horlings HM,Wong DJ,Tsai M-C,Hung T,Argani P,Rinn JL,Wang Y,Brzoska P,Kong B,Li R,West RB,van de Vijver MJ,Sukumar S,Chang HY

Long noncoding RNA as modular scaffold of histone modification complexes

Tsai M-C,Manor O,Wan Y,Mosammaparast N,Wang JK,Lan F,Shi Y,Segal E,Chang HY

A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression

Wang KC,Yang YW,Liu B,Sanyal A,Corces-Zimmerman R,Chen Y,Lajoie BR,Protacio A,Flynn RA,Gupta RA,Wysocka J,Lei M,Dekker J,Helms JA,Chang HY

Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis

Pauli A,Valen E,Lin MF,Garber M,Vastenhouw NL,Levin JZ,Fan L,Sandelin A,Rinn JL,Regev A,Schier AF

Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution

Ulitsky I,Shkumatava A,Jan CH,Sive H,Bartel DP

Evolution and functions of long noncoding RNAs

Chris P. Ponting,Peter L. Oliver,Wolf Reik
Cell 2009; volume 136: issue 4:629-41

Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells

Loewer S,Cabili MN,Guttman M,Loh Y-H,Thomas K,Park IH,Garber M,Curran M,Onder T,Agarwal S,Manos PD,Datta S,Lander ES,Schlaeger TM,Daley GQ,Rinn JL

lincRNAs act in the circuitry controlling pluripotency and differentiation

Guttman M,Donaghey J,Carey BW,Garber M,Grenier JK,Munson G,Young G,Lucas AB,Ach R,Bruhn L,Yang X,Amit I,Meissner A,Regev A,Rinn JL,Root DE,Lander ES

Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs

Rinn JL,Kertesz M,Wang JK,Squazzo SL,Xu X,Brugmann SA,Goodnough LH,Helms JA,Farnham PJ,Segal E,Chang HY

A global transcriptional analysis of Plasmodium falciparum malaria reveals a novel family of telomere-associated lncRNAs

Broadbent KM,Park D,Wolf AR,Van Tyne D,Sims JS,Ribacke U,Volkman S,Duraisingh M,Wirth D,Sabeti PC,Rinn JL

A Large Intergenic Noncoding RNA Induced by p53 Mediates Global Gene Repression in the p53 Response

Huarte M,Guttman M,Feldser D,Garber M,Koziol MJ,Kenzelmann-Broz D,Khalil AM,Zuk O,Amit I,Rabani M,Attardi LD,Regev A,Lander ES,Jacks T,Rinn JL